Package: ComBatFamQC 1.0.4
ComBatFamQC: Comprehensive Batch Effect Diagnostics and Harmonization
Provides a comprehensive framework for batch effect diagnostics, harmonization, and post-harmonization downstream analysis. Features include interactive visualization tools, robust statistical tests, and a range of harmonization techniques. Additionally, 'ComBatFamQC' enables the creation of life-span age trend plots with estimated age-adjusted centiles and facilitates the generation of covariate-corrected residuals for analytical purposes. Methods for harmonization are based on approaches described in Johnson et al., (2007) <doi:10.1093/biostatistics/kxj037>, Beer et al., (2020) <doi:10.1016/j.neuroimage.2020.117129>, Pomponio et al., (2020) <doi:10.1016/j.neuroimage.2019.116450>, and Chen et al., (2021) <doi:10.1002/hbm.25688>.
Authors:
ComBatFamQC_1.0.4.tar.gz
ComBatFamQC_1.0.4.zip(r-4.5)ComBatFamQC_1.0.4.zip(r-4.4)ComBatFamQC_1.0.4.zip(r-4.3)
ComBatFamQC_1.0.4.tgz(r-4.5-any)ComBatFamQC_1.0.4.tgz(r-4.4-any)ComBatFamQC_1.0.4.tgz(r-4.3-any)
ComBatFamQC_1.0.4.tar.gz(r-4.5-noble)ComBatFamQC_1.0.4.tar.gz(r-4.4-noble)
ComBatFamQC_1.0.4.tgz(r-4.4-emscripten)ComBatFamQC_1.0.4.tgz(r-4.3-emscripten)
ComBatFamQC.pdf |ComBatFamQC.html✨
ComBatFamQC/json (API)
NEWS
# Install 'ComBatFamQC' in R: |
install.packages('ComBatFamQC', repos = c('https://zheng206.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/zheng206/combatfamqc/issues
diagnostic-toolharmonizationrshinyapp
Last updated 2 months agofrom:38fbcb9299. Checks:1 OK, 7 NOTE. Indexed: yes.
Target | Result | Latest binary |
---|---|---|
Doc / Vignettes | OK | Feb 24 2025 |
R-4.5-win | NOTE | Feb 24 2025 |
R-4.5-mac | NOTE | Feb 24 2025 |
R-4.5-linux | NOTE | Feb 24 2025 |
R-4.4-win | NOTE | Feb 24 2025 |
R-4.4-mac | NOTE | Feb 24 2025 |
R-4.3-win | NOTE | Feb 24 2025 |
R-4.3-mac | NOTE | Feb 24 2025 |
Exports:.biweight_midvarage_list_genage_saveage_shinyage_table_genage_trend_plotcombat_harmcombat_plot_gencombat_table_gencomfamcomfam_shinycovfamcus_result_gencustomize_percentiledata_prepdiag_saveeb_checkform_gengetQuantileRefactoredinteraction_genmodel_genresidual_genvisual_prep
Dependencies:abindbackportsbase64encbootbroombslibcachemcarcarDataclicolorspacecommonmarkCompQuadFormcowplotcpp11crayoncrosstalkDerivdigestdoBydplyrDTevaluatefansifarverfastmapfontawesomeFormulafsgamlssgamlss.datagamlss.distgenericsggplot2gluegtablehighrhtmltoolshtmlwidgetshttpuvinvgammaisobandjquerylibjsonliteknitrlabelinglaterlatticelazyevallifecyclelme4magrittrMASSMatrixMatrixModelsMDMRmemoisemgcvmicrobenchmarkmimeminqamodelrmunsellnlmenloptrnnetnumDerivopenxlsxpbkrtestpillarpkgconfigpromisespurrrquantregR6rappdirsrbibutilsRColorBrewerRcppRcppEigenRdpackreformulasrlangrmarkdownRtsnesassscalesshinyshinydashboardsourcetoolsSparseMstringistringrsurvivaltibbletidyrtidyselecttinytexutf8vctrsviridisLitewithrxfunxtableyamlzip